PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G178200.1.p
Common NameGLYMA_18G178200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 365aa    MW: 42554.7 Da    PI: 5.5515
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G178200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1416.2e-1380150171
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkke 71 
                          +fY+ YA    Fs+rks+   + ++ge+ ++tfvCskeg+r+++  + ++++++ ++ tr+gCk  + v+ +
  Glyma.18G178200.1.p  80 QFYKWYAWANDFSIRKSHVLIN-KKGETLQQTFVCSKEGYRQDRGLSpRNRKHEYKNFTRCGCKVYICVHVN 150
                          6*****************9998.6777*****************99867777788999999**999999877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1080150IPR004330FAR1 DNA binding domain
PfamPF105517.7E-13264319IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEEHSISDCS NDGTFEDVHM EDDGVALRMM SLVSKVKNMC FWNEDGLDDN ECFENNVSDD  60
NELKDEEDYD NEVLNDEGYQ FYKWYAWAND FSIRKSHVLI NKKGETLQQT FVCSKEGYRQ  120
DRGLSPRNRK HEYKNFTRCG CKVYICVHVN ELIDHCGGHK HKLLNEQDCG LLSGHRKITA  180
SDAMQIENYR KVVIRPPHIY ASLAQTSGGY NKVGYVRKDI YNYFARQGRK QSSDVNRALN  240
YFHHLCPKDP MMVVAYIVDD ENRLQHLFCV NHHNNTIVFA TALVTNETEE TYVWLLEQFL  300
KEMKGKHPSS VITDGDFEIA EFDEKWNDMI TKFGLEDNNW VITLFERKQT WATTYIKGIF  360
FACI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359150.0AC235915.2 Glycine max clone GM_WBc0232C06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014626148.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0R0FCX30.0A0A0R0FCX3_SOYBN; Uncharacterized protein
STRINGGLYMA18G38897.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3265734
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-24FAR1-related sequence 5